GeCoPred

Genomic Coverage Prediction

What is GeCoPred?

GeCoPred is a web application that predicts the 4CMenB vaccine strain coverage of a Neisseria meningitidis B bacterial genome. Given one or more genomes in FASTA format, it returns the probability that the vaccine covers that genome.

The prediction is produced by a machine-learning model that runs in the background: you upload your genomes, and the system returns a coverage probability for each one (for example 0.9635 = 96.35% probability of being covered).

Upload your genomes

Provide one or more genomes in FASTA format, paste a sequence, or enter PubMLST IDs.

Predict coverage

The machine-learning model estimates the 4CMenB coverage probability for each genome.

Review your results

Browse your predictions, inspect the details, and export them to Excel.